Basenji

   Train and explore deep convolutional neural networks to sequentially predict DNA sequence continuous annotations.

Basset

    Train and explore deep convolutional neural networks to predict DNA sequence peak annotations.

 

Glimmer-MG

    Predict genes in metagenomic sequences augmented by classification and clustering.

 

Quake

    Detect and correct sequencing errors in whole-genome shotgun reads.

 

Scimm

Cluster metagenomic sequences using interpolated Markov models.